Much (but not all) contemporary philosophy of mind is written as if microphysics were fundamental physics. But as far as I know, only on those interpretations of quantum mechanics that disallow indeterminacy as to the number of particles can microphysics be fundamental physics. The most prominent such interpretation is Bohmianism. On most other interpretations, the most we can say about the number of particles is that we are in a superposition between states with different numbers of particles. But reality has to have determinate numbers of fundamental entities. The picture of reality we get from both relativity theory and mainstream interpretations of quantum mechanics other than Bohmianism and its close cousins is that fundamental physical reality consists of global entities such as the spacetime manifold or the wavefunction of the universe rather than microscopic entities like particles. (I am attracted to a non-mainstream interpretation on which the fundamental physical entities may include mid-sized things like dogs and trees.)
Sometimes, pretending microphysics is fundamental physics is excusable. For certain discussions, it doesn’t matter what the fundamental physics is—the arguments work equally well for global and local fundamental entities. In other cases, all that matters is relative fundamentality. Thus, facts about chemistry might be held to be more fundamental relative to biology, and facts about microphysics might be fundamental relative to chemistry, even if the microphysics facts themselves are not fundamental simpliciter, being reducible, say, to facts about global fields.
But even when the arguments do not formally rely on fundamental physics being microphysics, it is risky in a field so reliant on intuition to let one’s intuitions be guided by acting as if fundamental physics were microphysics. And doing this is likely to mis-focus one’s critical attention, say focusing one more on the puzzle of why the functioning of various neurons produces a unified consciousness than on the puzzle of how the functioning of a handful of global entities results in the existence of billions of minded persons.
